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Characterizing variability of electronic health record-driven phenotype definitions.

Pascal S Brandt, Abel Kho, Andrea Ramirez, Christopher G Chute, Chunhua Weng, Cong Liu, David S Carrell, Eric B Larson, George Hripcsak, Hakon Hakonarson, Iftikhar J Kullo, Jennifer A Pacheco, Josh Denny, Justin B Starren, Jyoti Pathak, Laura K Wiley, Luke V Rasmussen, Nephi Walton, Ning Shang, Paul K Crane, Rachel Richesson, Robert Carroll, Theresa L Walunas, Wei-Qi Wei, Yuan Luo

Comparing scientific abstracts generated by ChatGPT to real abstracts with detectors and blinded human reviewers.

Catherine A. Gao, Alexander T. Pearson, Emma C. Dyer, Frederick M. Howard, Nikolay S. Markov, Siddhi Ramesh, Yuan Luo

Transportability of bacterial infection prediction models for critically ill patients.

Garrett Eickelberg, Adrienne Sarah Kline, Lazaro Nelson Sanchez-Pinto, Yuan Luo

An exploratory survey about using ChatGPT in education, healthcare, and research.

Mohammad Hosseini, Abel Kho, Alexandre M. Carvalho, Catherine A. Gao, David M. Liebovitz, Faraz S. Ahmad, Kristi L. Holmes, Ngan MacDonald, Yuan Luo

A comparative study of pretrained language models for long clinical text.

Yikuan Li, Faraz S Ahmad, Hanyin Wang, Ramsey M Wehbe, Yuan Luo

Using machine learning to develop smart reflex testing protocols.

Matthew McDermott, Anand Dighe, Jason Baron, Peter Szolovits, Yuan Luo

Selection, optimization and validation of ten chronic disease polygenic risk scores for clinical implementation in diverse US populations.

Niall J. Lennon, Adam S. Gordon, Amit Khera, Anjene Musick, Atlas Khan, Bahram Namjou, Candace Patterson, Christopher Kachulis, Chunhua Weng, Clive Hoggart, Cynthia A. Prows, Dan M. Roden, Daniel J. Schaid, David Veenstra, David R. Crosslin, Diana M. Toledo, Digna R. Velez Edwards, Edyta Malolepsza, Eimear E. Kenny, Elisabeth A. Rosenthal, Elizabeth M. McNally, Elizabeth W. Karlson, Ellen Wright Clayton, Gail P. Jarvik, Georgia L. Wiesner, Gillian Belbin, Hakon Hakonarson, Heidi L. Rehm, Hemant Tiwari, Iftikhar Kullo, James B. Meigs, James J. Cimino, Jennifer E. Below, Jodell E. Linder, Joel Hirschhorn, Joel N. Hirschhorn, Johanna L. Smith, John J. Connolly, Jonathan D. Mosley, Jordan W. Smoller, Joseph T. Glessner, Josh Arias, Josh F. Peterson, Katie Larkin, Konrad Teodor Sawicki, Krzysztof Kiryluk, Leah C. Kottyan, Li Hsu, Li McCarthy, Lisa J. Martin, Lorenzo L. Pesce, Maegan Harden, Margaret Harr, Marguerite R. Irvin, Marissa Fisher, Megan J. Puckelwartz, Minta Thomas, Nataraja Sarma Vaitinadin, Nihal Pai, Nita Limdi, Noura S. Abul-Husn, Ozan Dikilitas, QiPing Feng, Robb Rowley, Robert R. Freimuth, Roelof A. J. Smit, Ruth Loos, Ruth J. F. Loos, Sonja Berndt, Sonja I. Berndt, Teri A. Manolio, Tesfaye B. Mersha, Theresa L. Walunas, Tian Ge, Ulrike Peters, Wei-Qi Wei, Wendy K. Chung, Xianyong Yin, Yuan Luo, Zhe Wang

Evaluation of the portability of computable phenotypes with natural language processing in the eMERGE network.

Jennifer A. Pacheco, Agnes S. Sundaresan, Al’ona Furmanchuk, Benjamin A. Satterfield, Chunhua Weng, Cong Liu, David J. Cronkite, David S. Carrell, Elisabeth A. Rosenthal, Elizabeth W. Karlson, Frank Mentch, Garrett Eickelberg, Girish N. Nadkarni, Iftikhar J. Kullo, Jodell E. Linder, Josh F. Peterson, Joshua C. Smith, Justin H. Gundelach, Ken Wiley, Krzysztof Kiryluk, Luke V. Rasmussen, Marc S. Williams, Nephi Walton, Ning Shang, Ozan Dikilitas, Roshan Patel, Shawn Murphy, Sunghwan Sohn, Theresa L. Walunas, Thomas Nate Person, Todd Lingren, Valerie Willis, Victor M. Castro, Vivian Gainer, WeiQi Wei, Yikuan Li, Yizhao Ni, Yu Deng, Yuan Luo

Unique molecular signatures sustained in circulating monocytes and regulatory T cells in convalescent COVID-19 patients.

Andrew D. Hoffmann, Alexis R. Demonbreun, Carolina Ostiguin, Chengsheng Mao, Ching Man Wai, Deyu Fang, Hannah Faisal Almubarak, Huiping Liu, Juncheng Wei, Lamiaa El-Shennawy, Laura J. Shihadah, Matthew J. Schipma, Michael G. Ison, Neale R. Wang, Nurmaa K. Dashzeveg, Paolo D'Amico, Paul J. Mehl, Sam E. Weinberg, Shuvam Chaudhuri, Suchitra Swaminathan, Xinkun Wang, Yuan Luo, Yuzhi Jia

A comprehensive SARS-CoV-2-human protein-protein interactome reveals COVID-19 pathobiology and potential host therapeutic targets.

Yadi Zhou, Cédric Feschotte, Chengsheng Mao, Feixiong Cheng, Glenn Randall, Haiyuan Yu, Haley Gula, John T. Lis, Julius Judd, Lara Jehi, Marta Bertolotti, Mauricio I. Paramo, Mriganka Nerkar, Nir Drayman, Peihui Wang, Savas Tay, Serpil C. Erzurum, Shagun Gupta, Shayne Wierbowski, Vlad Nicolaescu, Yuan Hou, Yuan Liu, Yuan Luo

AD-BERT: Using pre-trained language model to predict the progression from mild cognitive impairment to Alzheimer's disease.

Chengsheng Mao, Borna Bonakdarpour, Fei Wang, Guoqian Jiang, Jennifer Pacheco, Jie Xu, Jyotishman Pathak, Li Shen, Luke Rasmussen, Prakash Adekkanattu, Robert Vassar, Yikuan Li, Yuan Luo

Derivation, Validation, and Clinical Relevance of a Pediatric Sepsis Phenotype With Persistent Hypoxemia, Encephalopathy, and Shock.